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The relative importance of climate and humans in the disappearance of the Malagasy megafauna remains under debate. Data from southwestern Madagascar imply aridification contributed substantially to the late Holocene decline of the megafauna (the Aridification Hypothesis). Evidence for aridification includes carbon isotopes from tree rings, lacustrine charcoal concentrations and pollen assemblages, and changes in fossil vertebrate assemblages indicative of a local loss of pluvial conditions. In contrast, speleothem records from northwestern Madagascar suggest that megafaunal decline and habitat change resulted primarily from human activity including agropastoralism (the Subsistence Shift Hypothesis). Could there have been contrasting mechanisms of decline in different parts of Madagascar? Or are we lacking the precisely dated, high resolution records needed to fully understand the complex processes behind megafaunal decline? Reconciling these contrasting hypotheses requires additional climate records from southwestern Madagascar. We recovered a stalagmite (AF2) from Asafora Cave in the spiny thicket ecoregion, ~10 km from the southwest coast and just southeast of the Velondriake Marine Reserve. U-series and 14C dating of samples taken from the core of this stalagmite provide a highly precise chronology of the changes in hydroclimate and vegetation in this region over the past 3000 years. Speleothem stable oxygen and carbon isotope analyses provide insight into past rainfall variability and vegetation changes respectively. We compare these records with those for a stalagmite (AB2) from Anjohibe Cave in northwestern Madagascar. Lastly, odds ratio analyses of radiocarbon dates for extinct and extant subfossils allow us to describe and compare the temporal trajectories of megafaunal decline in the southwest and the northwest. Combined, these analyses allow us to test the Aridification Hypothesis for megafaunal extinction.